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Identification of the Genetic Causes of Rare Diseases With Negative Exome Findings

Primary Purpose

Rare Diseases, Genetic Predisposition to Disease

Status
Recruiting
Phase
Not Applicable
Locations
Germany
Study Type
Interventional
Intervention
WGS Diagnostic Blood take for genetic diagnostic.
Hair collection
Sponsored by
University Hospital Tuebingen
About
Eligibility
Locations
Arms
Outcomes
Full info

About this trial

This is an interventional basic science trial for Rare Diseases focused on measuring Rare Diseases, Genetic Predisposition, Whole Exome Sequencing, Whole Genome Sequencing (WGS), WGS-trio analysis

Eligibility Criteria

undefined - undefined (Child, Adult, Older Adult)All SexesDoes not accept healthy volunteers

Inclusion Criteria:

  • Unclear diagnosis
  • Suspected genetic cause of the disease
  • Previous detailed molecular analysis like Whole Exome Sequencing (WES) did not lead to the identification of the disease causing mechanism
  • Healthy parents of those affected for trio analysis (exception of one parent is not available for the study)

Exclusion Criteria:

  • Missing informed consent of the patient and her/his parents

Sites / Locations

  • University Hospital Tübingen
  • University Hospital TübingenRecruiting

Arms of the Study

Arm 1

Arm Type

Other

Arm Label

Study population

Arm Description

Both underage and adult persons (male and female) with diagnostically unsolved rare diseases who have been or are included into diagnostic care at the University Hospital Tübingen, Germany (UKT) and who are suspected of having a genetic cause of the disease. In addition, healthy parents of volunteers will be recruited if available to facilitate Trio studies. Study related procedures: Blood sampling, hair collection, anamnesis including pedigree, Next Generation Sequencing (NGS) analysis and other omics analysis (transcriptomics, proteomics, metabolomics), functional cell biology studies (for example in fibroblast cultures, organoid cultivation).

Outcomes

Primary Outcome Measures

Identification of the molecular causes of unclear rare diseases
Number of molecular causes

Secondary Outcome Measures

Diagnoses for patients with rare diseases
Number of diagnoses for patients with rare diseases
Molecular characterization of putative disease causes
Identify molecular characterization of the putative disease causes
Patients receiving appropriate therapy after successful diagnosis
Number of patients receiving appropriate therapy after successful diagnosis

Full Information

First Posted
March 17, 2020
Last Updated
May 17, 2022
Sponsor
University Hospital Tuebingen
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1. Study Identification

Unique Protocol Identification Number
NCT04315727
Brief Title
Identification of the Genetic Causes of Rare Diseases With Negative Exome Findings
Official Title
Identification of the Genetic Causes of Rare Diseases With Negative Exome Findings
Study Type
Interventional

2. Study Status

Record Verification Date
May 2022
Overall Recruitment Status
Recruiting
Study Start Date
February 1, 2021 (Actual)
Primary Completion Date
July 2024 (Anticipated)
Study Completion Date
December 2024 (Anticipated)

3. Sponsor/Collaborators

Responsible Party, by Official Title
Sponsor
Name of the Sponsor
University Hospital Tuebingen

4. Oversight

Studies a U.S. FDA-regulated Drug Product
No
Studies a U.S. FDA-regulated Device Product
No
Data Monitoring Committee
No

5. Study Description

Brief Summary
The GENOME + project will enroll patients (n = ca. 100) and their healthy parents with unclear molecular cause of the disease, suspected genetic cause of the disease and previous detailed molecular analysis like Whole Exome Sequencing (WES) did not lead to the identification of the disease causing mechanism. As well healthy parents of those affected for trio analysis (exception of one parent is not available for the study).
Detailed Description
In the GENOME+ study (monocentric, prospective, open-label diagnostic study), patients with molecularly undiagnosed diseases will diagnostically be analyzed by means of omics technologies or re-analyzed using existing datasets. The following questions will be leading the study: Primary: • Identification of the molecular causes of unclear rare diseases Secondary: Improve number of diagnoses for patients with rare diseases Further characterization of the identified putative disease causes Increase number of patients receiving appropriate therapy after successful diagnosis. In addition, healthy parents of the subjects may be included in the study to perform parent-child (trio) analyses. In addition, phenotype and omics data will be shared within the University Hospital Tübingen, Germany and with external collaborators to improve the diagnostic rate of the patients included in the study. Storage of blood or tissue samples is not primary goal of this project, but may be necessary for further analyses.

6. Conditions and Keywords

Primary Disease or Condition Being Studied in the Trial, or the Focus of the Study
Rare Diseases, Genetic Predisposition to Disease
Keywords
Rare Diseases, Genetic Predisposition, Whole Exome Sequencing, Whole Genome Sequencing (WGS), WGS-trio analysis

7. Study Design

Primary Purpose
Basic Science
Study Phase
Not Applicable
Interventional Study Model
Single Group Assignment
Masking
None (Open Label)
Allocation
N/A
Enrollment
100 (Anticipated)

8. Arms, Groups, and Interventions

Arm Title
Study population
Arm Type
Other
Arm Description
Both underage and adult persons (male and female) with diagnostically unsolved rare diseases who have been or are included into diagnostic care at the University Hospital Tübingen, Germany (UKT) and who are suspected of having a genetic cause of the disease. In addition, healthy parents of volunteers will be recruited if available to facilitate Trio studies. Study related procedures: Blood sampling, hair collection, anamnesis including pedigree, Next Generation Sequencing (NGS) analysis and other omics analysis (transcriptomics, proteomics, metabolomics), functional cell biology studies (for example in fibroblast cultures, organoid cultivation).
Intervention Type
Genetic
Intervention Name(s)
WGS Diagnostic Blood take for genetic diagnostic.
Intervention Description
Blood sampling, shot clinical characterization, WGS based trio sequencing, NGS analysis and other omics analysis (transcriptomics, proteomics, metabolomics), functional cell biology studies (for example in fibroblast cultures), RNA Sequencing (RNA-seq).
Intervention Type
Genetic
Intervention Name(s)
Hair collection
Intervention Description
Hair including root will be collected from the scalp (~15-20) and transferred to cultivation medium for the organoid cultivation
Primary Outcome Measure Information:
Title
Identification of the molecular causes of unclear rare diseases
Description
Number of molecular causes
Time Frame
Day 1
Secondary Outcome Measure Information:
Title
Diagnoses for patients with rare diseases
Description
Number of diagnoses for patients with rare diseases
Time Frame
Day 1
Title
Molecular characterization of putative disease causes
Description
Identify molecular characterization of the putative disease causes
Time Frame
Day 1
Title
Patients receiving appropriate therapy after successful diagnosis
Description
Number of patients receiving appropriate therapy after successful diagnosis
Time Frame
Day 1

10. Eligibility

Sex
All
Accepts Healthy Volunteers
No
Eligibility Criteria
Inclusion Criteria: Unclear diagnosis Suspected genetic cause of the disease Previous detailed molecular analysis like Whole Exome Sequencing (WES) did not lead to the identification of the disease causing mechanism Healthy parents of those affected for trio analysis (exception of one parent is not available for the study) Exclusion Criteria: Missing informed consent of the patient and her/his parents
Central Contact Person:
First Name & Middle Initial & Last Name or Official Title & Degree
Olaf Rieß, Prof. Dr.
Phone
+49 7071 29
Ext
72323
Email
olaf.riess@med.uni-tuebingen.de
First Name & Middle Initial & Last Name or Official Title & Degree
Andreas Dufke, PD Dr.
Phone
+49 7071 29
Ext
72190
Email
andreas.dufke@med.uni-tuebingen.de
Overall Study Officials:
First Name & Middle Initial & Last Name & Degree
Olaf Rieß
Organizational Affiliation
University Hospital Tübingen
Official's Role
Study Director
Facility Information:
Facility Name
University Hospital Tübingen
City
Tübingen
ZIP/Postal Code
72076
Country
Germany
Individual Site Status
Not yet recruiting
Facility Contact:
First Name & Middle Initial & Last Name & Degree
Olaf Rieß, Prof. Dr.
Phone
+49 7071 29
Ext
72323
Email
olaf.riess@med.uni-tuebingen.de
First Name & Middle Initial & Last Name & Degree
Andreas Dufke, PD Dr.
Phone
+49 7071 29
Ext
72190
Email
andreas.dufke@med.uni-tuebingen.de
Facility Name
University Hospital Tübingen
City
Tübingen
ZIP/Postal Code
72076
Country
Germany
Individual Site Status
Recruiting
Facility Contact:
First Name & Middle Initial & Last Name & Degree
Olaf Rieß, Prof. Dr.
Phone
+49 7071 29
Ext
72323
Email
0laf.riess@med.uni-tuebingen.de
First Name & Middle Initial & Last Name & Degree
Andreas Dufke, PD Dr.
Phone
+49 7071 29
Ext
72190
Email
andreas.dufke@med.uni-tuebingen.de

12. IPD Sharing Statement

Plan to Share IPD
Yes
IPD Sharing Plan Description
The GENOME+ study will provide data in a pseudonymized manner to national and international databases set up to increase the diagnostic yield through advanced analysis tools and matchmaking against other cohorts
IPD Sharing Time Frame
Data will become available after analysis and unlimited.
IPD Sharing Access Criteria
Authorized users within the participating organizations

Learn more about this trial

Identification of the Genetic Causes of Rare Diseases With Negative Exome Findings

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