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Effect of Tenapanor on the Metagenomics and Metabolomics of Patients With Irritable Bowel Syndrome With Constipation

Primary Purpose

IBS, IBS - Irritable Bowel Syndrome

Status
Not yet recruiting
Phase
Phase 4
Locations
Study Type
Interventional
Intervention
Tenapanor
Sponsored by
Kyle Staller, MD, MPH
About
Eligibility
Locations
Arms
Outcomes
Full info

About this trial

This is an interventional treatment trial for IBS

Eligibility Criteria

18 Years - 75 Years (Adult, Older Adult)All SexesDoes not accept healthy volunteers

Inclusion Criteria: Ages 18-75 years old BMI >18.5 and <35 kg/m2 Rome IV criteria for IBS-C for at least 6 months Compliant with baseline stool submission prior to initiation of medication Ability to follow verbal and written instructions Ability to record daily bowel habits, including frequency, stool consistency (BSFS), and symptom severity Willingness to avoid major dietary changes and use of probiotics during the study period Informed consent form signed by the subjects Exclusion Criteria: History of loose stools History of irritable bowel syndrome with diarrhea (IBS-D) or mixed irritable bowel syndrome (IBS-M) Non-compliance with baseline stool submission Previous use of tenapanor GI motility obstruction or GI tract structural abnormality Current use of prescribed or illicit opioids History of pelvic floor dysfunction Need for manual maneuvers in order to achieve a BM History of GI lumen surgery at any time or other GI or abdominal operations within 60 days prior to entry into the study History of high-dose stimulative or cathartic laxative abuse as judged by investigator team Severe IBS-C as judged by the investigator Neurological disorders, metabolic disorders, or other significant disease that would impair their ability to participate in the study Cardiovascular disease, diabetes, cancer, Crohn's disease, ulcerative colitis BMI of <18.5 or >35 kg/m2 Pregnancy (or positive serum or urine pregnancy test(s) in females of childbearing potential) or lactation Absence of contraception in females of childbearing potential History of allergic reaction to tenapanor Administration of other FDA-approved agents for the treatment of IBS-C within 1 month prior to Screening Visit: Linaclotide Lubiprostone Plecanatide If treated with any of the following medications, dosing (or approximate frequency of 'as needed' use) must be stable for at least 30 days prior to Screening Visit and the subject must agree to maintain the same dose (or approximate frequency of 'as needed' use) or a decreased dose of medication throughout the study: Probiotics Bulk laxatives, fiber, and stool softeners Exclusion of colonic inertia with symptoms of < 1 BM per 2 weeks Subjects anticipating surgical intervention during the study Known history of diabetes (type 1 or 2) Subjects with recent antibiotic use (last 3 months) or anticipated antibiotic use during the study period History of inflammatory bowel disease Supine SBP > 160 mm Hg and/or supine DBP > 95 mm Hg (mean of two consecutive readings) Angina, coronary bypass, or myocardial infarction within 6 months prior to Screening Visit History of swallowing disorders History of gastric bypass or any other gastric surgery History of small bowel resection (except if related to appendectomy) History of gastric or duodenal ulcer History of gastroparesis History of abdominal radiation treatment History of pancreatitis History of intestinal stricture (e.g., Crohn's disease) History of intestinal obstruction or subjects at high risk of intestinal obstruction including suspected small bowel adhesions History of malabsorption History of hepatitis B or C History of human immunodeficiency virus History of cancer within the past 5 years (except adequately-treated localized basal cell skin cancer or in situ uterine cervical cancer) Any other clinically significant disease interfering with the assessments of tenapanor, according to the Investigator (e.g., disease requiring corrective treatment, potentially leading to study discontinuation) HbA1c > 8.5% (> 69 mmol/mol) 43. Any relevant biochemical abnormality interfering with the assessments of tenapanor, according to the Investigator 44. Antidiabetic medications within 1 month prior to Screening Visit (except stable dose of metformin, ≤ 1500 mg/day, for at least 1 month in subjects with type 2 diabetes) 45. Medications requiring mandatory administration twice per day with meals

Sites / Locations

    Arms of the Study

    Arm 1

    Arm Type

    Experimental

    Arm Label

    Patients with IBS-C

    Arm Description

    Outcomes

    Primary Outcome Measures

    Measuring metagenomics of stool samples using whole genome shotgun sequencing (WGS)
    Sequence-based microbial community surveys will be carried out by whole genome shotgun sequencing (WGS) at the Broad Institute using their established sequencing and analysis pipeline for the Illumina HiSeq2000 platform used in Human Microbiome Project (HMP) to characterize rare taxa and understand relationships between community membership and function. Composition analysis of metagenome will be performed using the read-based bioinformatics analysis suite. Functional genomic profiles, detailed species-specific reconstruction of microbial metabolic pathways, their complement of gene orthologs, taxonomic distributions, and abundances will be generated with HUMAnN2. This will provide taxon-specific profiles of UniRef orthologous gene families, MetCyc, UniPathway, and KEGG pathways to survey microbial community metabolite production potential in each metagenome according to tenapanor use.
    Measuring metabolomics of stool samples using the DiscoveryHD4TM Platform
    Stool samples will also undergo metabolomics profiling at Metabolon Inc using the DiscoveryHD4TM Platform, a comprehensive and well-validated high-throughput metabolomics platform available for clinical and research use. Metabolites are identified by automated comparison of the ion features in the experimental samples to a reference library of ~8,000 chemical standard entries that include retention time, molecular weight (m/z), preferred adducts, in-source fragments and MS spectra, and they are visually curated for quality control using Metabolon software.

    Secondary Outcome Measures

    Full Information

    First Posted
    August 3, 2023
    Last Updated
    August 10, 2023
    Sponsor
    Kyle Staller, MD, MPH
    Collaborators
    Ardelyx
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    1. Study Identification

    Unique Protocol Identification Number
    NCT05995899
    Brief Title
    Effect of Tenapanor on the Metagenomics and Metabolomics of Patients With Irritable Bowel Syndrome With Constipation
    Official Title
    An Open-label, Single Center Investigator Sponsored Study Assessing the Effect of Tenapanor on Metagenomic and Metabolomic Markers in Patients With Irritable Bowel Syndrome With Constipation
    Study Type
    Interventional

    2. Study Status

    Record Verification Date
    August 2023
    Overall Recruitment Status
    Not yet recruiting
    Study Start Date
    November 2023 (Anticipated)
    Primary Completion Date
    November 2026 (Anticipated)
    Study Completion Date
    November 2026 (Anticipated)

    3. Sponsor/Collaborators

    Responsible Party, by Official Title
    Sponsor-Investigator
    Name of the Sponsor
    Kyle Staller, MD, MPH
    Collaborators
    Ardelyx

    4. Oversight

    Studies a U.S. FDA-regulated Drug Product
    Yes
    Studies a U.S. FDA-regulated Device Product
    No
    Product Manufactured in and Exported from the U.S.
    Yes

    5. Study Description

    Brief Summary
    The aim of this study is to better understand how tenapanor affects the metagenomics and metabolomics of patients with irritable bowel syndrome with constipation (IBS-C). Tenapanor is the newest FDA-approved agent for IBS-C. It is a small molecule that inhibits the NHE3 receptor, leading to impaired sodium and water absorption in the intestine. Previous clinical trials comparing tenapanor to placebo showed that a 50 mg dose of tenapanor led to increased bowel movements and decreased abdominal pain. This study consists of an 8-week treatment period in which subjects will ingest one capsule of tenapanor (50 mg per dose), twice daily, and send in stool samples following 4 weeks and 8 weeks of treatment.

    6. Conditions and Keywords

    Primary Disease or Condition Being Studied in the Trial, or the Focus of the Study
    IBS, IBS - Irritable Bowel Syndrome

    7. Study Design

    Primary Purpose
    Treatment
    Study Phase
    Phase 4
    Interventional Study Model
    Single Group Assignment
    Masking
    None (Open Label)
    Allocation
    N/A
    Enrollment
    30 (Anticipated)

    8. Arms, Groups, and Interventions

    Arm Title
    Patients with IBS-C
    Arm Type
    Experimental
    Intervention Type
    Drug
    Intervention Name(s)
    Tenapanor
    Intervention Description
    IBS-C patients will ingest one capsule of tenapanor (50 mg per dose), twice daily, before breakfast and dinner for a total of 8 weeks
    Primary Outcome Measure Information:
    Title
    Measuring metagenomics of stool samples using whole genome shotgun sequencing (WGS)
    Description
    Sequence-based microbial community surveys will be carried out by whole genome shotgun sequencing (WGS) at the Broad Institute using their established sequencing and analysis pipeline for the Illumina HiSeq2000 platform used in Human Microbiome Project (HMP) to characterize rare taxa and understand relationships between community membership and function. Composition analysis of metagenome will be performed using the read-based bioinformatics analysis suite. Functional genomic profiles, detailed species-specific reconstruction of microbial metabolic pathways, their complement of gene orthologs, taxonomic distributions, and abundances will be generated with HUMAnN2. This will provide taxon-specific profiles of UniRef orthologous gene families, MetCyc, UniPathway, and KEGG pathways to survey microbial community metabolite production potential in each metagenome according to tenapanor use.
    Time Frame
    Subjects will submit stool samples at 0 weeks, 4 weeks, and 8 weeks following treatment.
    Title
    Measuring metabolomics of stool samples using the DiscoveryHD4TM Platform
    Description
    Stool samples will also undergo metabolomics profiling at Metabolon Inc using the DiscoveryHD4TM Platform, a comprehensive and well-validated high-throughput metabolomics platform available for clinical and research use. Metabolites are identified by automated comparison of the ion features in the experimental samples to a reference library of ~8,000 chemical standard entries that include retention time, molecular weight (m/z), preferred adducts, in-source fragments and MS spectra, and they are visually curated for quality control using Metabolon software.
    Time Frame
    Subjects will submit stool samples at 0 weeks, 4 weeks, and 8 weeks following treatment.

    10. Eligibility

    Sex
    All
    Minimum Age & Unit of Time
    18 Years
    Maximum Age & Unit of Time
    75 Years
    Accepts Healthy Volunteers
    No
    Eligibility Criteria
    Inclusion Criteria: Ages 18-75 years old BMI >18.5 and <35 kg/m2 Rome IV criteria for IBS-C for at least 6 months Compliant with baseline stool submission prior to initiation of medication Ability to follow verbal and written instructions Ability to record daily bowel habits, including frequency, stool consistency (BSFS), and symptom severity Willingness to avoid major dietary changes and use of probiotics during the study period Informed consent form signed by the subjects Exclusion Criteria: History of loose stools History of irritable bowel syndrome with diarrhea (IBS-D) or mixed irritable bowel syndrome (IBS-M) Non-compliance with baseline stool submission Previous use of tenapanor GI motility obstruction or GI tract structural abnormality Current use of prescribed or illicit opioids History of pelvic floor dysfunction Need for manual maneuvers in order to achieve a BM History of GI lumen surgery at any time or other GI or abdominal operations within 60 days prior to entry into the study History of high-dose stimulative or cathartic laxative abuse as judged by investigator team Severe IBS-C as judged by the investigator Neurological disorders, metabolic disorders, or other significant disease that would impair their ability to participate in the study Cardiovascular disease, diabetes, cancer, Crohn's disease, ulcerative colitis BMI of <18.5 or >35 kg/m2 Pregnancy (or positive serum or urine pregnancy test(s) in females of childbearing potential) or lactation Absence of contraception in females of childbearing potential History of allergic reaction to tenapanor Administration of other FDA-approved agents for the treatment of IBS-C within 1 month prior to Screening Visit: Linaclotide Lubiprostone Plecanatide If treated with any of the following medications, dosing (or approximate frequency of 'as needed' use) must be stable for at least 30 days prior to Screening Visit and the subject must agree to maintain the same dose (or approximate frequency of 'as needed' use) or a decreased dose of medication throughout the study: Probiotics Bulk laxatives, fiber, and stool softeners Exclusion of colonic inertia with symptoms of < 1 BM per 2 weeks Subjects anticipating surgical intervention during the study Known history of diabetes (type 1 or 2) Subjects with recent antibiotic use (last 3 months) or anticipated antibiotic use during the study period History of inflammatory bowel disease Supine SBP > 160 mm Hg and/or supine DBP > 95 mm Hg (mean of two consecutive readings) Angina, coronary bypass, or myocardial infarction within 6 months prior to Screening Visit History of swallowing disorders History of gastric bypass or any other gastric surgery History of small bowel resection (except if related to appendectomy) History of gastric or duodenal ulcer History of gastroparesis History of abdominal radiation treatment History of pancreatitis History of intestinal stricture (e.g., Crohn's disease) History of intestinal obstruction or subjects at high risk of intestinal obstruction including suspected small bowel adhesions History of malabsorption History of hepatitis B or C History of human immunodeficiency virus History of cancer within the past 5 years (except adequately-treated localized basal cell skin cancer or in situ uterine cervical cancer) Any other clinically significant disease interfering with the assessments of tenapanor, according to the Investigator (e.g., disease requiring corrective treatment, potentially leading to study discontinuation) HbA1c > 8.5% (> 69 mmol/mol) 43. Any relevant biochemical abnormality interfering with the assessments of tenapanor, according to the Investigator 44. Antidiabetic medications within 1 month prior to Screening Visit (except stable dose of metformin, ≤ 1500 mg/day, for at least 1 month in subjects with type 2 diabetes) 45. Medications requiring mandatory administration twice per day with meals
    Central Contact Person:
    First Name & Middle Initial & Last Name or Official Title & Degree
    Annie Zhu
    Phone
    6177240480
    Email
    azhu13@mgh.harvard.edu
    First Name & Middle Initial & Last Name or Official Title & Degree
    Kyle D. Staller, MD, MPH
    Email
    kstaller@mgh.harvard.edu

    12. IPD Sharing Statement

    Learn more about this trial

    Effect of Tenapanor on the Metagenomics and Metabolomics of Patients With Irritable Bowel Syndrome With Constipation

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