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NeuroSeq: A Prospective Trial to Evaluate the Diagnostic Yield of Whole Genome Sequencing (WGS) in Adult Neurology (NeuroSEQ)

Primary Purpose

Neurologic Deficits, Neurologic Disorder, Neurologic Abnormalities

Status
Active
Phase
Not Applicable
Locations
United States
Study Type
Interventional
Intervention
clinical Whole Genome Sequencing
Sponsored by
Illumina, Inc.
About
Eligibility
Locations
Arms
Outcomes
Full info

About this trial

This is an interventional other trial for Neurologic Deficits

Eligibility Criteria

18 Years - undefined (Adult, Older Adult)All SexesAccepts Healthy Volunteers

Inclusion Criteria:

  1. Age ≥ 18 years at the time of consent
  2. Participant is referred to a Neurogenetics Program due to suspected genetic etiology of a neurological syndrome
  3. No history of prior genetic testing for the suspected condition in the participant or any family member with a similar phenotype
  4. Must be able to have one - 4 to 6 ml tube of whole blood drawn for testing
  5. Able to provide written consent. If participant unable to do so, a legally authorized representative (LAR) must do so on behalf of the participant

Exclusion Criteria:

  1. Any known non-genetic cause(s) of disease, disorder, or phenotypic defect
  2. Eligibility for enrollment of each participant is at the discretion of the site PI
  3. Patient is unable or unwilling to undergo any form(s) of SOC genetic testing
  4. SOC testing is NOT requested for the participant

Sites / Locations

  • Univ. of Pennsylvania

Arms of the Study

Arm 1

Arm Type

Other

Arm Label

Single Cohort

Arm Description

All participants will receive cWGS testing revealed to the site PI/clinician at Day 180. Participants will all receive standard of care testing throughout the study.

Outcomes

Primary Outcome Measures

Diagnostic Yield between cWGS and SOC testing
The number of participants who have a diagnosis in the SOC arm vs the cWGS arm as measured by the test outcome

Secondary Outcome Measures

Change of Management between cWGS and SOC testing as measured by a management questionnaire collected on a case report form
The number of participants who have a change in management after receiving SOC results vs cWGS results as measured by a management questionnaire at baseline, Day 180 and Day 365
Resource Utilization between cWGS and SOC testing
The number of participants who have utilized resources to include specialist referrals, tests/procedures ordered and procedures avoided in the SOC arm vs the cWGS arm as measured by data collection case report forms
Quality of Life between cWGS and SOC testing
Comparison between Quality-of-Life scores as measured by the 12-Item Short Form Survey (SF12) from baseline compared to end of study
Diagnostic Accuracy between cWGS and SOC testing when comparing the medical monitor test outcome and the site PI test outcome
Diagnostic accuracy- percent positive agreement between test outcome classified by the medical monitor and the site PI or designee
Diagnostic Yield within Cohort when evaluating specific Neurologic disorders
Difference in diagnostic yield between cohorts of neurological disorders

Full Information

First Posted
November 18, 2019
Last Updated
December 7, 2022
Sponsor
Illumina, Inc.
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1. Study Identification

Unique Protocol Identification Number
NCT04170985
Brief Title
NeuroSeq: A Prospective Trial to Evaluate the Diagnostic Yield of Whole Genome Sequencing (WGS) in Adult Neurology
Acronym
NeuroSEQ
Official Title
NeuroSeq: A Prospective Trial to Evaluate the Diagnostic Yield of Human Whole Genome Sequencing (WGS) Compared to Standard of Care in Adults With Suspected Genetic Neurological Disorders
Study Type
Interventional

2. Study Status

Record Verification Date
December 2022
Overall Recruitment Status
Active, not recruiting
Study Start Date
November 18, 2019 (Actual)
Primary Completion Date
February 2023 (Anticipated)
Study Completion Date
February 2023 (Anticipated)

3. Sponsor/Collaborators

Responsible Party, by Official Title
Sponsor
Name of the Sponsor
Illumina, Inc.

4. Oversight

Studies a U.S. FDA-regulated Drug Product
No
Studies a U.S. FDA-regulated Device Product
No
Data Monitoring Committee
No

5. Study Description

Brief Summary
Prospective, multi-site, single-arm study to evaluate the diagnostic yield of cWGS in adults with neurological disorders. A single cohort naive of genetic testing will receive standard of care testing for 180 days followed by cWGS. The cohort will be followed for a total of 365 days following enrollment.
Detailed Description
This is a prospective, randomized study to evaluate the diagnostic yield of SOC compared to cWGS in each participant. Throughout this study, each participant will receive SOC testing as determined by the site clinical team. After the physician orders SOC testing during standard clinical practice, the subject will be introduced and invited to participate in the study. On Day 180, the participant will receive a cWGS result and the participant will continue to be followed for an additional 180 days. A blood sample from each enrolled participant will be collected and shipped to the Illumina Clinical Services Laboratory ("ICSL"), which is Clinical Laboratory Improvement Amendments (CLIA)-certified and College of American Pathologists (CAP)-accredited. ICSL will conduct cWGS testing with the TruGenome Undiagnosed Disease Test ("TruGenome Test"). The TruGenome Test cWGS results will be provided to the Principal Investigator (PI) or designee who will evaluate each participant's test outcome based on aggregate medical information.

6. Conditions and Keywords

Primary Disease or Condition Being Studied in the Trial, or the Focus of the Study
Neurologic Deficits, Neurologic Disorder, Neurologic Abnormalities

7. Study Design

Primary Purpose
Other
Study Phase
Not Applicable
Interventional Study Model
Single Group Assignment
Model Description
Single cohort who receives standard of care testing prior to the results from cWGS.
Masking
None (Open Label)
Masking Description
Clinician/study PI is blinded to the WGS results until Day 180.
Allocation
N/A
Enrollment
100 (Anticipated)

8. Arms, Groups, and Interventions

Arm Title
Single Cohort
Arm Type
Other
Arm Description
All participants will receive cWGS testing revealed to the site PI/clinician at Day 180. Participants will all receive standard of care testing throughout the study.
Intervention Type
Other
Intervention Name(s)
clinical Whole Genome Sequencing
Intervention Description
Participants will receive cWGS as well as standard of care testing. The clinician/site PI will be blinded to the cWGS results until Day 180.
Primary Outcome Measure Information:
Title
Diagnostic Yield between cWGS and SOC testing
Description
The number of participants who have a diagnosis in the SOC arm vs the cWGS arm as measured by the test outcome
Time Frame
Day 0 - Day 365
Secondary Outcome Measure Information:
Title
Change of Management between cWGS and SOC testing as measured by a management questionnaire collected on a case report form
Description
The number of participants who have a change in management after receiving SOC results vs cWGS results as measured by a management questionnaire at baseline, Day 180 and Day 365
Time Frame
Day 0 - Day 365
Title
Resource Utilization between cWGS and SOC testing
Description
The number of participants who have utilized resources to include specialist referrals, tests/procedures ordered and procedures avoided in the SOC arm vs the cWGS arm as measured by data collection case report forms
Time Frame
Day 0 - Day 365
Title
Quality of Life between cWGS and SOC testing
Description
Comparison between Quality-of-Life scores as measured by the 12-Item Short Form Survey (SF12) from baseline compared to end of study
Time Frame
Day 0 - Day 365
Title
Diagnostic Accuracy between cWGS and SOC testing when comparing the medical monitor test outcome and the site PI test outcome
Description
Diagnostic accuracy- percent positive agreement between test outcome classified by the medical monitor and the site PI or designee
Time Frame
Day 0 - Day 180
Title
Diagnostic Yield within Cohort when evaluating specific Neurologic disorders
Description
Difference in diagnostic yield between cohorts of neurological disorders
Time Frame
Day 0 - Day 365
Other Pre-specified Outcome Measures:
Title
Time to Diagnosis between cWGS and SOC testing
Description
Average time (in days) to diagnosis between SOC and cWGS testing (duration between when sample is approved and when result(s) is/are delivered)
Time Frame
Day 0 - Day 365
Title
Clinical Survey by the clinician who ordered SOC testing
Description
Clinician and genetic counselor satisfaction measured by an end-of-study questionnaire determining the overall satisfaction with the use of cWGS testing
Time Frame
Day 365
Title
Participant Survey
Description
Participant satisfaction measured by an end-of-study questionnaire determining the overall satisfaction with the use of cWGS testing Participant satisfaction measured by an end-of-study questionnaire determining the participant's overall satisfaction with the use of cWGS testing
Time Frame
Day 365

10. Eligibility

Sex
All
Minimum Age & Unit of Time
18 Years
Accepts Healthy Volunteers
Accepts Healthy Volunteers
Eligibility Criteria
Inclusion Criteria: Age ≥ 18 years at the time of consent Participant is referred to a Neurogenetics Program due to suspected genetic etiology of a neurological syndrome No history of prior genetic testing for the suspected condition in the participant or any family member with a similar phenotype Must be able to have one - 4 to 6 ml tube of whole blood drawn for testing Able to provide written consent. If participant unable to do so, a legally authorized representative (LAR) must do so on behalf of the participant Exclusion Criteria: Any known non-genetic cause(s) of disease, disorder, or phenotypic defect Eligibility for enrollment of each participant is at the discretion of the site PI Patient is unable or unwilling to undergo any form(s) of SOC genetic testing SOC testing is NOT requested for the participant
Overall Study Officials:
First Name & Middle Initial & Last Name & Degree
Ryan J Taft, Ph.D
Organizational Affiliation
Illumina, Inc.
Official's Role
Study Chair
Facility Information:
Facility Name
Univ. of Pennsylvania
City
Philadelphia
State/Province
Pennsylvania
ZIP/Postal Code
19104
Country
United States

12. IPD Sharing Statement

Plan to Share IPD
No
IPD Sharing Plan Description
There is not a plan in place to share data with other researchers.

Learn more about this trial

NeuroSeq: A Prospective Trial to Evaluate the Diagnostic Yield of Whole Genome Sequencing (WGS) in Adult Neurology

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