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Personalized Adoptive Cellular Therapy Targeting MDS Stem Cell Neoantigens (PACTN)

Primary Purpose

Myelodysplastic Syndromes

Status
Unknown status
Phase
Phase 1
Locations
United States
Study Type
Interventional
Intervention
PACTN
Sponsored by
PersImmune, Inc
About
Eligibility
Locations
Arms
Outcomes
Full info

About this trial

This is an interventional treatment trial for Myelodysplastic Syndromes focused on measuring MDS

Eligibility Criteria

18 Years - undefined (Adult, Older Adult)All SexesDoes not accept healthy volunteers

Inclusion Criteria:

  • Confirmed diagnosis of MDS according to the French-American-British (FAB) criteria. Subjects with MDS must have intermediate, high, or very high risk IPSS-R scores and cytopenia of at least one lineage.
  • Relapsed/refractory disease, or inadequate response to at least 6 cycles of hypomethylating (HMA) therapy or subjects who decline HMA therapy. Subjects must not have received any MDS or AML directed therapy for >28 days prior to receiving the study treatment.
  • Subjects who have opted not to undergo allogeneic hematopoietic stem cell transplantation or for whom no donor is available and who are not deemed eligible for high intensity chemotherapy.
  • Age >18 year at the time of obtaining informed consent, male or female.
  • An Eastern Cooperative Oncology Grou (ECOG) performance status score of 0, 1, or 2.
  • Adequate organ function.
  • Seronegative test for HIV-1/2 and hepatitis C antibodies (HCV), and a negative test for Hepatitis B antigen (HBsAg). If hepatitis C antibody test is positive, then the subject must be tested for the presence of antigen by RT-PCR and be HCV RNA negative.
  • Women of childbearing potential must have negative pregnancy test prior to initiating study treatment.
  • Life expectancy >6 months at time of screening.
  • Ability to adhere to the protocol requirements and study visit schedule.

Exclusion Criteria:

  • Subjects who anticipate use of other investigational or non-investigational agents for the treatment of MDS during the study period, aside from a stable dose of erythropoietin stimulating agent started >8 weeks prior to screening for this study.
  • Subjects who have received investigational agents, cytotoxic chemotherapy, or radiotherapy within 28 days prior to entering the study, or who have not recovered from AEs dur to agents administered more than 28 days earlier.
  • Subjects who are less than 21 days from surgery or have insufficient recovery from surgical-related trauma or wound healing.
  • Prior history of allogeneic hematopoietic stem cell transplantation.
  • Current use of granulocyte colony-stimulating factory (G-CSF) or GM-CSF.
  • History of major organ autoimmune disease.
  • Concurrent immunosuppressive therapy. A stable dose of prednisone <10 mg daily or inhaled corticosteroids are allowed.
  • Any form of primary immunodeficiency.
  • Active bacillus tuberculosis (TB) or any other active or uncontrolled infection.
  • Pior history of treated malignancy in the past 2 years. Subjects with non-melanoma skin cancer, localized prostate cancer, and carcinoma in situ of the breast of cervix are allowed.
  • Impaired cardiac function.
  • Pregnant women are excluded from this study as the proposed treatment has not been well studied in pregnant subjects.
  • Any other medical or psychiatric disorders, or social situation, that would, in the investigator's opinion, place the subject at unacceptable risk if he/she participates in the study.

Sites / Locations

  • University of California, San Diego

Arms of the Study

Arm 1

Arm Type

Experimental

Arm Label

PACTN

Arm Description

Open label 3+3 dose escalation phase 1 trial; 200 to 1000 mL of immunized T cells infused at 0.3, 1, and 3 x 10e7 nucleated cells/kg body weight.

Outcomes

Primary Outcome Measures

Acute and subacute toxicities and AEs
The incidence of dose limiting toxicities (DLTs) after PACTN infusion will be used to determine the maximum tolerated dose (MTD). Adverse effects (AEs) and in particular cytokine release syndrome (CRS) and potential autoimmune AEs will be monitored.

Secondary Outcome Measures

Persistence, abundance, and activity of PACTN
Determined by quantity of PACTN in the subject's blood sample, assessed by the unique phenotype of PACTN lymphocytes and by functional measurement of PACTN activity (antigen-specific cytotoxicity)
Disease Response
Disease response will be assessed by International Working Group (IWG) criteria on bone marrow aspiration
Overall and progression-free survival of subjects who receive PACTN
Incidence of subjects who are alive, and both alive and disease - free will be assessed at 6 and 12 months

Full Information

First Posted
August 18, 2017
Last Updated
March 3, 2020
Sponsor
PersImmune, Inc
Collaborators
University of California, San Diego
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1. Study Identification

Unique Protocol Identification Number
NCT03258359
Brief Title
Personalized Adoptive Cellular Therapy Targeting MDS Stem Cell Neoantigens (PACTN)
Official Title
A Phase 1 Clinical Trial of Personalized, Adoptive Cellular Immunotherapy Targeting Patient-specific Neoplastic Stem Cell Neoantigens (PACTN) in Patients With Myelodysplastic Syndromes (MDS)
Study Type
Interventional

2. Study Status

Record Verification Date
March 2020
Overall Recruitment Status
Unknown status
Study Start Date
January 1, 2018 (Actual)
Primary Completion Date
December 1, 2020 (Anticipated)
Study Completion Date
December 1, 2020 (Anticipated)

3. Sponsor/Collaborators

Responsible Party, by Official Title
Sponsor
Name of the Sponsor
PersImmune, Inc
Collaborators
University of California, San Diego

4. Oversight

Studies a U.S. FDA-regulated Drug Product
Yes
Studies a U.S. FDA-regulated Device Product
No
Data Monitoring Committee
Yes

5. Study Description

Brief Summary
This study will evaluate the safety of autologous T cells that have been immunized ex vivo with patient-specific MDS stem cell neoantigens in patients with MDS.
Detailed Description
PACTN is manufactured by a novel method to employ cancer-specific somatic variants (mutations) as a means to immunize autologous T lymphocytes to specifically kill cancer cells bearing the protein products of the mutations. The PACTN method is based on the premise that somatic DNA mutations that cause cancer often give rise to proteins with an altered amino acid sequence. Peptides derived from these proteins, if expressed in the context of MHC Class I or II may be perceived as "non-self" by the immune system; that is, they may be perceived as neoantigens (aka, neoepitopes). Such neoantigens could therefore serve as immunogenic targets for the development of patient-specific, personalized T cell mediated immunotherapy.

6. Conditions and Keywords

Primary Disease or Condition Being Studied in the Trial, or the Focus of the Study
Myelodysplastic Syndromes
Keywords
MDS

7. Study Design

Primary Purpose
Treatment
Study Phase
Phase 1
Interventional Study Model
Single Group Assignment
Masking
None (Open Label)
Allocation
N/A
Enrollment
12 (Anticipated)

8. Arms, Groups, and Interventions

Arm Title
PACTN
Arm Type
Experimental
Arm Description
Open label 3+3 dose escalation phase 1 trial; 200 to 1000 mL of immunized T cells infused at 0.3, 1, and 3 x 10e7 nucleated cells/kg body weight.
Intervention Type
Biological
Intervention Name(s)
PACTN
Intervention Description
To treat patients with MDS who have failed treatment with hypomethylating agents or have relapsed after treatment with hypomethylating agents or have declined hypomethylating therapy.
Primary Outcome Measure Information:
Title
Acute and subacute toxicities and AEs
Description
The incidence of dose limiting toxicities (DLTs) after PACTN infusion will be used to determine the maximum tolerated dose (MTD). Adverse effects (AEs) and in particular cytokine release syndrome (CRS) and potential autoimmune AEs will be monitored.
Time Frame
baseline to four weeks after infusion
Secondary Outcome Measure Information:
Title
Persistence, abundance, and activity of PACTN
Description
Determined by quantity of PACTN in the subject's blood sample, assessed by the unique phenotype of PACTN lymphocytes and by functional measurement of PACTN activity (antigen-specific cytotoxicity)
Time Frame
Samples will be collected on days 1, 4, 8, 15, 36, and 57, and then 3, 6, and 12 months
Title
Disease Response
Description
Disease response will be assessed by International Working Group (IWG) criteria on bone marrow aspiration
Time Frame
Samples will be collected between day 29 and 43, and then at 3, 6, and 12 months
Title
Overall and progression-free survival of subjects who receive PACTN
Description
Incidence of subjects who are alive, and both alive and disease - free will be assessed at 6 and 12 months
Time Frame
Six and 12 months after PACTN infusion
Other Pre-specified Outcome Measures:
Title
The duration of hematologic response, if any
Description
Assessed by measurements of blood counts during subject follow-up, employing IWG criteria
Time Frame
Up to 12 months
Title
PACTN persistence or peak abundance and clinical response
Description
The grouped data on the clinical response and the 6 month and 1-year survival will be analyzed to assess if there is an association between PACTN persistence or peak abundance in blood, and either extent or duration of clinical response or subject survival
Time Frame
6 months and 1 year
Title
Changes in Variant allele frequency (VAF) of somatic mutations targeted by PACTN
Description
VAFs of targeted mutations will be assessed in blood and marrow after PACTN infusion
Time Frame
From 4 days up to 1 year

10. Eligibility

Sex
All
Minimum Age & Unit of Time
18 Years
Accepts Healthy Volunteers
No
Eligibility Criteria
Inclusion Criteria: Confirmed diagnosis of MDS according to the French-American-British (FAB) criteria. Subjects with MDS must have intermediate, high, or very high risk IPSS-R scores and cytopenia of at least one lineage. Relapsed/refractory disease, or inadequate response to at least 6 cycles of hypomethylating (HMA) therapy or subjects who decline HMA therapy. Subjects must not have received any MDS or AML directed therapy for >28 days prior to receiving the study treatment. Subjects who have opted not to undergo allogeneic hematopoietic stem cell transplantation or for whom no donor is available and who are not deemed eligible for high intensity chemotherapy. Age >18 year at the time of obtaining informed consent, male or female. An Eastern Cooperative Oncology Grou (ECOG) performance status score of 0, 1, or 2. Adequate organ function. Seronegative test for HIV-1/2 and hepatitis C antibodies (HCV), and a negative test for Hepatitis B antigen (HBsAg). If hepatitis C antibody test is positive, then the subject must be tested for the presence of antigen by RT-PCR and be HCV RNA negative. Women of childbearing potential must have negative pregnancy test prior to initiating study treatment. Life expectancy >6 months at time of screening. Ability to adhere to the protocol requirements and study visit schedule. Exclusion Criteria: Subjects who anticipate use of other investigational or non-investigational agents for the treatment of MDS during the study period, aside from a stable dose of erythropoietin stimulating agent started >8 weeks prior to screening for this study. Subjects who have received investigational agents, cytotoxic chemotherapy, or radiotherapy within 28 days prior to entering the study, or who have not recovered from AEs dur to agents administered more than 28 days earlier. Subjects who are less than 21 days from surgery or have insufficient recovery from surgical-related trauma or wound healing. Prior history of allogeneic hematopoietic stem cell transplantation. Current use of granulocyte colony-stimulating factory (G-CSF) or GM-CSF. History of major organ autoimmune disease. Concurrent immunosuppressive therapy. A stable dose of prednisone <10 mg daily or inhaled corticosteroids are allowed. Any form of primary immunodeficiency. Active bacillus tuberculosis (TB) or any other active or uncontrolled infection. Pior history of treated malignancy in the past 2 years. Subjects with non-melanoma skin cancer, localized prostate cancer, and carcinoma in situ of the breast of cervix are allowed. Impaired cardiac function. Pregnant women are excluded from this study as the proposed treatment has not been well studied in pregnant subjects. Any other medical or psychiatric disorders, or social situation, that would, in the investigator's opinion, place the subject at unacceptable risk if he/she participates in the study.
Overall Study Officials:
First Name & Middle Initial & Last Name & Degree
Antonella Vitiello, PhD
Organizational Affiliation
PersImmune, Inc
Official's Role
Study Director
Facility Information:
Facility Name
University of California, San Diego
City
San Diego
State/Province
California
ZIP/Postal Code
92093
Country
United States

12. IPD Sharing Statement

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Personalized Adoptive Cellular Therapy Targeting MDS Stem Cell Neoantigens (PACTN)

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